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Month: December 2024

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New Community Partner: CAREamics!

New Community Partner: CAREamics!

by Joran Deschamps, Beatriz Serrano-Solano

CAREamics, a library that simplifies using deep-learning denoising algorithms, has joined the BioImage Model Zoo.

With CAREamics, users can improve their analysis pipelines by removing noise from their microscopy images through robust image restoration. By leveraging popular deep learning methods, CAREamics empowers researchers to recover high-quality data from low light or fast imaging,  ensuring lower sample phototoxicity, better quantification, and reproducibility in their experiments.

As a Community Partner, CAREamics now provides ready-to-use models compatible with the BioImage.io model format. 

Discover CAREamics models on the BioImage Model Zoo: https://bioimage.io/#/?partner=careamics&type=application

 

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SpotMax joins the BioImage Model Zoo as a Community Partner

SpotMax joins the BioImage Model Zoo as a Community Partner

by Beatriz Serrano-Solano

We are excited to announce that SpotMax, the advanced image analysis framework, has officially joined the BioImage Model Zoo as a Community Partner! This collaboration allows users to leverage SpotMax for running BioImage.io models, further enhancing its integration into the growing bioimage analysis ecosystem.

SpotMax is renowned for its powerful capabilities in automated spot detection and quantification of microscopy images. With a user-friendly interface and built-in features for cell segmentation and tracking, SpotMax enables researchers to harness the full potential of multi-dimensional datasets.

As part of this partnership, SpotMax now provides ready-to-use models and workflows fully compatible with the BioImage.io model format. These tools are readily accessible through the BioImage Model Zoo, empowering researchers to integrate SpotMax models into their analysis pipelines.

This integration underscores our commitment to fostering collaboration and accessibility in bioimage analysis. By bringing SpotMax into the BioImage Model Zoo, we aim to provide the research community with a richer, more versatile toolkit for tackling diverse challenges in bioimaging.

We are delighted to welcome SpotMax as a Community Partner and can’t wait to see the transformative impact of this partnership. Explore SpotMax models on the BioImage Model Zoo today!

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AI4Life at SPAOM 2024: Bridging Advanced Microscopy and AI-Driven Image Analysis

AI4Life at SPAOM 2024: Bridging Advanced Microscopy and AI-Driven Image Analysis

by Caterina Fuster-Barceló

The Spanish-Portuguese Advanced Optical Microscopy Meeting (SPAOM) 2024 brought together leading experts in optical microscopy and image analysis to foster collaboration and innovation in the field. Held this year in the historic city of Toledo, in the Castilla-La Mancha region, SPAOM once again proved to be a dynamic platform for knowledge exchange, networking, and showcasing cutting-edge advancements.


AI4Life was represented by Arrate Muñoz-Barrutia and Caterina Fuster-Barceló, who played a pivotal role in the event. They hosted an engaging Image Analysis Forum, introducing AI4Life and the BioImage Model Zoo, two initiatives revolutionising the intersection of artificial intelligence and bioimaging. During the forum, participants also learned about the BioImage.IO Chatbot and the BioImage Archive, which are closely linked to AI4Life’s mission to advance open and accessible bioimage analysis tools and datasets.

 

Beyond the forum, Arrate and Caterina immersed themselves in the vibrant SPAOM community, networking with researchers and discovering the remarkable projects spearheaded by other attendees. Their participation highlighted AI4Life’s commitment to fostering collaboration and pushing the boundaries of AI applications in bioimaging.

We are excited to see how the connections and ideas sparked at SPAOM 2024 will continue to shape the future of advanced microscopy and image analysis. Stay tuned for updates on AI4Life’s next steps!